About the bored, I would just do plywood with holes drilled in for power and cables. Do you have a power supply like VooDoo power or do you use batteries/9volt cables? If you have 9 volt cables, i would get a power strip and mount it on the bottom. Realize that if you have a big board, you're gonna need to make a frame type thing to keep it from "sinking". If its just gonna be like 6 pedals, you don't need to worry about that much, so you can just get like a 1"x1" or 1"x2" piece of wood to cut and put it on the bottom.
Idk if that makes any sense lol. Usually if i post something long like that its confusing and unorganized.
But for the case, I would check out
R&R Cases. They make custom cases, and for what you need, I wouldn't go to guitar center and get something that'll probably cost you >$200.00 that isn't exactly like you need.